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So the question is jroc (or anyone else) how do we heal the gut?

nothing new or revolutionary or rocket science in here. just a few extra things that might help assuming that someone is already doing a LSD/NSD.

foods that could cause problems - dairy, nightshades (tomatoes, bell peppers, eggplant), chocolate, excess sugar.
beverages - cola drinks (anything with caffeine and sugar), coffee, alcohol.

things that could help - butyric acid producing foods like prunes, green tea (theanine content boots immunity), garlic, ginger (starchy but anti-inflammatory).

supplements that can help - glutamine (fuel for gut lining), olive leaf extract (antibacterial + antiviral immune support). boswellia extract - natural TNF-a inhibitor has been to shown to have similar efficacy to ibuprofen without the gut damaging side effects, omega 3's.

that's all i can think of for now - one thing for sure is that everybody responds different to everything and one persons poison may be anothers medicine.